Software

• Animations and visualization done with the Moviemol program by Lars Ojamäe, Ohio State University
  • Molecular Dynamics Simulation of Liquid Water.
  • Periodic Hartree-Fock Studies of ice VIII.
  • Modelling H5O2+.
  • Phonon Modes in Ice II.
• Animations by Scott G. Flicker,University of Michigan, in colloidal science and specifically lipid bilayer membranes
• Animations connected to the Educational Materials for Organic Chemistry at Michigan State University by Abby Parrill.
• Biocomputing Center at NASA
• Cell Movement by the University of Vermont Department of Molecular Physiology and Biophysics.
• Changing States, Quantum and Classical Simulations of Molecular Aggregates Michael Klein, University of Pennsylvania
• Chemistry at Imperial College , England
• CHEMvisu: Visualisierung in der Chemie. This homepage contains a collection of new possibilities showing molecules interactively on the internet using a browser.
• Chemistry Visualizations Movies from Virginia Tech
• Cornell Theory Center
  • Applying defects in ceramics
  • Molecular sponges
  • Protein folding
  • Drug design
• College of Chemistry at U.C. Berkeley
  • Movies of some of the interesting vibrational modes in Benzene
  • Movies of some interesting chemical reactions
• Department of Physical Chemistry at the Technical University of Darmstadt
  • Animations
  • Molecular Dynamics Simulation with Java
  • VRML for the communication with 3D scenarios of biomolecules
• Fixed Molecule Photoelectron Angular Distributions, Photofragmentation Dynamics Group (I Powis), University of Nottingham, England.
• GRASP (Graphical Representation and Analysis of Structural Properties) visualizations by Anthony Nicholls.
• Hahnemann University School of Medicine US (Biochemistry)
• Hyperactive Molecules by Henry Rzepa at Imperial College Chemistry Department and Benjamin Whitaker at the School of Chemistry, Leeds University, UK.
• IBM Almaden Research Center Visualization Lab
  • Molecular Dynamics Simulations
  • Quantum Corrals
  • STM Image Gallery
• The Image Library of Biological Macromolecules, Institut für Molekulare Biotechnologie, Biocomputing, Jena, Germany
• Institute for Molecular Virology University of Wisconsin, USA
  • Computer visualizations of viruses
  • Digitized images of viruses by electron microscope
  • Topographical maps of viruses
• Klotho: Biochemical Compounds Declarative Database
• Mysteries of Water, Theoretical Study of Small Water Clusters Ken Jordan, University of Pittsburgh.
• Molecular Docking Web by Garret M. Morris.
  • Visualisation by Ed Moret using AutoDock
• MO Animation of Organic Reaction Mechanisms at Brigham Young University.
• MOLMOL (MOLecule analysis and MOLecule display) visualization at ETH (Zurich) and Contributed Image Gallery.
• The Materials and Process Simulation Center (MSC) of the Beckman Institute at the California Institute of Technology.
  • Molecular Modeling Gallery
• MSMS, Molecular Graphics Gallery of molecular surfaces, lattice modeling of proteins and computational geometry.
• Nanothinc, an Internet-based publisher/developer/ distributor webcasting interactive and enhanced multimedia nanocontent.
  • Nano Gallery
• PovChem Gallery. Combining chemistry, ray tracing, and a little art to make high-quality molecular graphics.
• QUANTA animations in biochemistry by Jakob P. Halaska.
• RASMOL Gallery. The images in this gallery were created with the RasMol viewer.
• Re_View animations by Jeffrey J. Gosper.
  • Examples
  • Additional Simulations for Re_View
  • Simulated Reactions
• Sam Houston State University, visualizations in chemistry.
• SURFNET program visualizations.
• SWISS-Image. Collection of Macromolecule Images
• UCSF MidasPlus Sample Images
• Visualization in chemistry by the Department of Physical Chemistry at the University of Geneva
• Visualizations at MSI.
• Visualizations in chemistry at NCSA
• Visualizations and animations by Dr. Michael G. Prisant

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Chemistry Programs